Index Catalog // Emory Theses and Dissertations

1. Directed Evolution and Computational Design of Nucleoside Analog Kinases

Student Name:: Liu, LingFeng
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

2. Synthesis of protein-based polymers with the potential to form physically and covalently cross-linked networks

Student Name:: Patterson, Melissa Ann
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry and Chemistry, General
Department:: Chemistry

3. Amyloid Conformational Diversity Accessed By Truncations of a Native Protein Fold

Student Name:: Johnson, Savannah Jayne
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

4. Enzyme Engineering

Student Name:: Yu, Ying
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

5. Nanoscale Tools to Expand the Biophysical Understanding of Epidermal Growth Factor Receptor Function

Student Name:: Stabley, Daniel Ryan
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry, Biophysics, General, and Biology, Cell
Department:: Chemistry

6. Programmed Self-assembly of Coiled-coil Peptides

Student Name:: Xu, Chunfu
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

7. Investigation of C-H Bond Oxidation Reactions: I. Asymmetric Amination of C-H Bonds Using Ruthenium(II) Catalysts II. Investigation of Structural Determinants of Monoamine Oxidase B

Student Name:: Milczek, Erika Marie
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Organic and Chemistry, Biochemistry
Department:: Chemistry

8. Development of Monocarbonyl Curcumin Analogues Towards Treating Tuberculosis and Cancer

Student Name:: Baldwin, Patrick Richard
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry, Chemistry, General, and Health Sciences, Pharmacology
Department:: Chemistry

9. Muti-site specific incorporation of non-canonical amino acids for biomaterials design

Student Name:: Wu, I-Lin
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

10. Generating designer enzymes for therapeutic and industrial applications

Student Name:: Daugherty, Ashley Bagwell
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry and Chemistry, General
Department:: Chemistry

11. THE BROAD-HOST-RANGE PATHOGENESIS OF AGROBACTERIUM TUMEFACIENS: SUCCESSFUL COUPLING THE MOTIONS AND DOMAIN INTERACTIONS WITHIN VIRA TO INTEGRATE SIGNAL SENSING

Student Name:: Lin, Yi-Han
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

12. Amyloid: Merging the Properties of Membranes and Enzymes

Student Name:: Childers, William Seth
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry and Biophysics, General
Department:: Chemistry

13. Engineering Asymmetric Peptide Membranes

Student Name:: Li, Sha
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry, Chemistry, General, and Chemistry, Physical
Department:: Chemistry

14. Conformational Exchange: A Common Mechanism for Amyloid Assembly

Student Name:: Simmons, James Austin
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry, Chemistry, General, and Biophysics, General
Department:: Chemistry

15. I: Expanding Genetic Code in S. cevevisiae with an Orthogonal tRNATrp/UCA/ Tryptophanyl tRNA Synthetase Pair II: Synthetic Yeast Prions based on a Non-NQ-rich Amyloidogenic Sequence Derived from the NAC Protein Sequence of α-Synuclein.

Student Name:: Peng, Weilin
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

16. Part I. Design of a novel class of reversible non-covalent small molecule inhibitors for human Granzyme B (hGrB) Part II. Curcumin and mimics as proteasome inhibitors Part III. Design of novel coactivator binding inhibitors (CBIs) for the estrogen receptor α : break the 1µM barrier

Student Name:: Kim, Mi-Sun
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

17. Development and Application of Synthetic Riboswitches as Tools to Study Bacterial Pathogenesis

Student Name:: Reynoso, Colleen Knight
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

18. Engineering of elastin using noncanonical amino acids

Student Name:: Kim, Wook Hyun
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

19. Engineering The Substrate Specificity Of Human Deoxycytidine Kinase

Student Name:: Iyidogan, Pinar
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

20. Engineering Candida antarctica lipase B by circular permutation and incremental truncation

Student Name:: Qian, Zhen
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

21. Expression and Functional Characterization of Monoamine Oxidasefrom the Zebrafish (Danio Rerio): Comparisons with HumanMonoamine Oxidases A and B

Student Name:: Kacar, Betul
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

22. The Rational Design of Environmentally-Responsive Elements in Synthetic Helical Fibers

Student Name:: Dublin, Steven Nathan
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

23. Generation of Novel Yeast Prions through Domain Substitutions of Saccharomyces cerevisiae Sup35p

Student Name:: Qi, Xiaojie
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

24. Biological Engineering with Chemical-Sensing MacromolecularSwitches: I. Discovery and Applications of Small-Molecule DependentSynthetic Riboswitches II. A Genetic Toolbox for CreatingReversible Ca 2+ -Sensitive Biomaterials

Student Name:: Topp, Shana
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry, Biology, Molecular, and Engineering, Chemical
Department:: Chemistry

25. Part I: Structure and Function in the NMDA Ligand Binding DomainPart II: Comparison of Paclitaxel Analogs through MolecularDynamics Simulation; Solution Conformations of Cyclic Peptides

Student Name:: Geballe, Matthew Thomas
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

26. Energetic Contribution of Amyloid Self-assembly

Student Name:: Liang, Yan
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

27. Semagenesis & Xenognosis: Translating the Molecular Dialogues of Host-Parasite Interactions

Student Name:: Palmer, Andrew George
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry and Biology, Plant Physiology
Department:: Chemistry

28. Photolabeling of the Human Dopamine Transporter and theReactivity of Aryl Azides with Amino Acid Analogs

Student Name:: Holmes Morris, Muhsinah Lateefah
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry, Chemistry, Analytical, and Chemistry, General
Department:: Chemistry

29. A Type-II Thymidine Kinase from Thermotoga maritima: KineticCharacterization, Substrate Binding, and Oligomerization

Student Name:: Lichter, Joseph
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry and Chemistry, Analytical
Department:: Chemistry

30. Biomaterials Design: Creation of a novel orthogonal translationalsystem in E. coli for the site-specific incorporation ofproline analogues in biosynthetic protein materials

Student Name:: Carpenter, Holly Elizabeth
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

31. Comparative Structural and Functional Properties of Human and Rat Monoamine Oxidases

Student Name:: Wang, Jin
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

32. Part I: Measles virus entry into cells and the inhibition offusion and replicationPart II: The nature of cyclostreptin's interaction withmicrotubules

Student Name:: Prussia, Andrew James
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Organic, Chemistry, Pharmaceutical, and Chemistry, Biochemistry
Department:: Chemistry

33. Development of Microfluidic Mixing Techniques to study Enzymatic Reactions

Student Name:: Kise, Drew Phillip
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry and Chemistry, General
Department:: Chemistry

34. Cross-ß Folds of Amyloid as a Versatile Self-Propagating Catalyst

Student Name:: Omosun, Tolulope Olayinka
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

35. Role of Loop Motions in Enzyme Catalysis

Student Name:: Reddish, Michael
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry, Chemistry, General, and Chemistry, Physical
Department:: Chemistry

36. Heterogeneity in fast-folding beta proteins

Student Name:: Davis, Caitlin Mearns Marlatt
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry, Chemistry, General, and Chemistry, Physical
Department:: Chemistry

37. Development of Fluorescence-based Molecular Tension Probes to Investigate Cellular Mechanical Forces

Student Name:: Jurchenko, Carol
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

38. Two-Dimensional Self-Assembly of Collagen-Mimetic Peptides

Student Name:: Jiang, Tao
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry and Chemistry, General
Department:: Chemistry

39. Understanding Synthetic Riboswitch Mechanism and Creating Predictive Biophysical Model for Designing Novel Synthetic Riboswitches

Student Name:: Wang, Jingzhi
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

40. Data-Driven Engineering of Therapeutic Enzymes

Student Name:: Muthu, Pravin J.
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry
Department:: Chemistry

41. Understanding signal transduction systems in prokaryotes and eukaryotes

Student Name:: Jia, Xin
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry, Chemistry, Analytical, and Chemistry, General
Department:: Chemistry

42. Metastable Phases Direct Polymer Emergence and Evolution in Dynamic Chemical Networks

Student Name:: Chen, Chenrui
Date Uploaded:: 08/28/2018
Research Field:: Chemistry, Biochemistry, Chemistry, General, and Chemistry, Analytical
Department:: Chemistry

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1. Directed Evolution and Computational Design of Nucleoside Analog Kinases

2. Synthesis of protein-based polymers with the potential to form physically and covalently cross-linked networks

3. Amyloid Conformational Diversity Accessed By Truncations of a Native Protein Fold

4. Enzyme Engineering

5. Nanoscale Tools to Expand the Biophysical Understanding of Epidermal Growth Factor Receptor Function

6. Programmed Self-assembly of Coiled-coil Peptides

7. Investigation of C-H Bond Oxidation Reactions: I. Asymmetric Amination of C-H Bonds Using Ruthenium(II) Catalysts II. Investigation of Structural Determinants of Monoamine Oxidase B

8. Development of Monocarbonyl Curcumin Analogues Towards Treating Tuberculosis and Cancer

9. Muti-site specific incorporation of non-canonical amino acids for biomaterials design

10. Generating designer enzymes for therapeutic and industrial applications

11. THE BROAD-HOST-RANGE PATHOGENESIS OF AGROBACTERIUM TUMEFACIENS: SUCCESSFUL COUPLING THE MOTIONS AND DOMAIN INTERACTIONS WITHIN VIRA TO INTEGRATE SIGNAL SENSING

12. Amyloid: Merging the Properties of Membranes and Enzymes

13. Engineering Asymmetric Peptide Membranes

14. Conformational Exchange: A Common Mechanism for Amyloid Assembly

15. I: Expanding Genetic Code in S. cevevisiae with an Orthogonal tRNATrp/UCA/ Tryptophanyl tRNA Synthetase Pair II: Synthetic Yeast Prions based on a Non-NQ-rich Amyloidogenic Sequence Derived from the NAC Protein Sequence of α-Synuclein.

16. Part I. Design of a novel class of reversible non-covalent small molecule inhibitors for human Granzyme B (hGrB) Part II. Curcumin and mimics as proteasome inhibitors Part III. Design of novel coactivator binding inhibitors (CBIs) for the estrogen receptor α : break the 1µM barrier

17. Development and Application of Synthetic Riboswitches as Tools to Study Bacterial Pathogenesis

18. Engineering of elastin using noncanonical amino acids

19. Engineering The Substrate Specificity Of Human Deoxycytidine Kinase

20. Engineering Candida antarctica lipase B by circular permutation and incremental truncation

21. Expression and Functional Characterization of Monoamine Oxidasefrom the Zebrafish (Danio Rerio): Comparisons with HumanMonoamine Oxidases A and B

22. The Rational Design of Environmentally-Responsive Elements in Synthetic Helical Fibers

23. Generation of Novel Yeast Prions through Domain Substitutions of Saccharomyces cerevisiae Sup35p

24. Biological Engineering with Chemical-Sensing MacromolecularSwitches: I. Discovery and Applications of Small-Molecule DependentSynthetic Riboswitches II. A Genetic Toolbox for CreatingReversible Ca 2+ -Sensitive Biomaterials

25. Part I: Structure and Function in the NMDA Ligand Binding DomainPart II: Comparison of Paclitaxel Analogs through MolecularDynamics Simulation; Solution Conformations of Cyclic Peptides

26. Energetic Contribution of Amyloid Self-assembly

27. Semagenesis & Xenognosis: Translating the Molecular Dialogues of Host-Parasite Interactions

28. Photolabeling of the Human Dopamine Transporter and theReactivity of Aryl Azides with Amino Acid Analogs

29. A Type-II Thymidine Kinase from Thermotoga maritima: KineticCharacterization, Substrate Binding, and Oligomerization

30. Biomaterials Design: Creation of a novel orthogonal translationalsystem in E. coli for the site-specific incorporation ofproline analogues in biosynthetic protein materials

31. Comparative Structural and Functional Properties of Human and Rat Monoamine Oxidases

32. Part I: Measles virus entry into cells and the inhibition offusion and replicationPart II: The nature of cyclostreptin's interaction withmicrotubules

33. Development of Microfluidic Mixing Techniques to study Enzymatic Reactions

34. Cross-ß Folds of Amyloid as a Versatile Self-Propagating Catalyst

35. Role of Loop Motions in Enzyme Catalysis

36. Heterogeneity in fast-folding beta proteins

37. Development of Fluorescence-based Molecular Tension Probes to Investigate Cellular Mechanical Forces

38. Two-Dimensional Self-Assembly of Collagen-Mimetic Peptides

39. Understanding Synthetic Riboswitch Mechanism and Creating Predictive Biophysical Model for Designing Novel Synthetic Riboswitches

40. Data-Driven Engineering of Therapeutic Enzymes

41. Understanding signal transduction systems in prokaryotes and eukaryotes

42. Metastable Phases Direct Polymer Emergence and Evolution in Dynamic Chemical Networks

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